Plots a density plot from two mcols of a GRanges object files that were already calculated using bw_loci or bw_bins
Usage
plot_gr_density(
gr,
x,
y,
plot_binwidth = 0.05,
remove_top = 0,
verbose = TRUE,
selection = NULL
)Arguments
- gr
Scored GRanges object
- x
Column in gr corresponding to the x axis
- y
Column in gr corresponding to the y axis.
- plot_binwidth
Resolution of the bins in the density histogram (different to genomic bin size)
- remove_top
Return range 0-(1-remove_top). By default returns the whole distribution (remove_top == 0).
- verbose
Put a caption with relevant parameters on the plot.
- selection
A GRanges object to restrict binning to a certain set of intervals. This is useful for debugging and improving performance of locus specific analyses.