Internal function to plot ranges in violin plot with a highlighted GRanges. — .violin_body • wigglescout

Internal function to plot ranges in violin plot with a highlighted GRanges.

Usage

.violin_body(
  gr,
  highlight = NULL,
  minoverlap = 0L,
  highlight_label = NULL,
  highlight_colors = NULL
)

Arguments

gr: GRanges object with as many columns as samples to plot.
highlight: List of GRanges to use as highlight for subgroups.
minoverlap: Minimum overlap required for a locus to be highlighted
highlight_label: Labels for the highlight groups. If not provided, column names are used.
highlight_colors: Array of color values for the highlighting groups

Value

A named list where plot is a ggplot object and calculated is a list of calculated values (for verbose mode).