Scatterplot of values in a GRanges object with mcols x and y — .scatterplot_body • wigglescout

Plots a scatter plot from a GRanges object that already has x and y columns.

Usage

.scatterplot_body(
  gr,
  highlight = NULL,
  minoverlap = 0L,
  highlight_label = NULL,
  highlight_colors = NULL
)

Arguments

gr: GRanges
highlight: List of GRanges to use as highlight for subgroups.
minoverlap: Minimum overlap required for a locus to be highlighted
highlight_label: Labels for the highlight groups. If not provided, column names are used.
highlight_colors: Array of color values for the highlighting groups

Value

A named list where plot is a ggplot object and calculated is a list of calculated values (for verbose mode).