Calculate overlap of one GRanges with a main GRanges object

Calculate overlap of one GRanges with a main GRanges object

Usage

.multi_ranges_overlap(main_ranges, other_ranges, labels, minoverlap)

Arguments

main_ranges

Main GRanges to which overlap is calculated.

other_ranges

A list of GRanges objects

labels

Labels to each of the other_ranges.

minoverlap

Minimum overlap to consider an overlap.

Value

A data.frame in tall format with the values of the overlapping loci. Loci returned belong to other_ranges, NOT main_ranges. A group field is added as factor.